Protein ZmHB24 | |
---|---|
Information | |
TF Name: | ZmHB24 |
Species: | Maize |
TF Family: | Homeobox |
Gene Name(Synonym): | HB24 |
Uniprot ID: | K7UFU4 |
Subgenome: | 2 |
ZmHB24 is a protein in the Homeobox family.
Overview of domains present in v5 transcripts | |||
---|---|---|---|
PF00046 | PF02183 | PF05920 | |
Zm00001eb208000_T001 |
Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
---|---|---|---|---|---|
Zm00001d000303 | DAPseq | sequence | fimo | position | |
Zm00001d000303 | DAPseq | sequence | fimo | position | |
Zm00001d000303 | ChIPseq | sequence | fimo | position | |
Zm00001d000303 | PChIPseq | sequence | fimo | position |
MSSLTTAASSSSSMEEHCYSVSAEEVVGTHLSLGIGGGGGGGDKRMLTTLPPSRTVVQLFGEVLSVQDGDEAQALRHHHT
GRPTAASRKKKRRDAAAGGASATDAAANGHHHQSKKTKTTAARRDDGGGGGGGGRKKLRLTAAQATLLEDSFRAHNILSH
GEKQELARQAGLSARQVEVWFQNRRARTKLKQTEVDCDLLRRWCARLSDDNDRLRRDLADLRRAAAASAGLGAVVCCASC
GADRQLALAAAADNVLPSVASPSHSPHLT
MSSLTTAASSSSSMEEHCYSVSAEEVVGTHLSLGIGGGGGGGDKRMLTTLPPSRTVVQLFGEVLSVQDGDEAQALRHHHT
GRPTAASRKKKRRDAAAGGASATDAAANGHHHQSKKTKTTAARRDDGGGGGGGGRKKLRLTAAQATLLEDSFRAHNILSH
GEKQELARQAGLSARQVEVWFQNRRARTKLKQTEVDCDLLRRWCARLSDDNDRLRRDLADLRRAAAASAGLGAVVCCASC
GADRQLALAAAADNVLPSVASPSHSPHLT
MSSLTTAASSSSSMEEHCYSVSAEEVVGTHLSLGIGGGGGGGDKRMLTTLPPSRTVVQLFGEVLSVQDGDEAQALRHHHT
GRPTAASRKKKRRDAAAGGASATDAAANGHHHQSKKTKTTAARRDDGGGGGGGGRKKLRLTAAQATLLEDSFRAHNILSH
GEKQELARQAGLSARQVEVWFQNRRARTKLKQTEVDCDLLRRWCARLSDDNDRLRRDLADLRRAAAASAGLGAVVCCASC
GADRQLALAAAADNVLPSVASPSHSPHLT
MSSLTTAASSSSSMEEHCYSVSAEEVVGTHLSLGIGGGGGGGDKRMLTTLPPSRTVVQLFGEVLSVQDGDEAQALRHHHT
GRPTAASRKKKRRDAAAGGASATDAAANGHHHQSKKTKTTAARRDDGGGGGGGGRKKLRLTAAQATLLEDSFRAHNILSH
GEKQELARQAGLSARQVEVWFQNRRARTKLKQTEVDCDLLRRWCARLSDDNDRLRRDLADLRRAAAASAGLGAVVCCASC
GADRQLALAAAADNVLPSVASPSHSPHLT
MSSLTTAASSSSSMEEHCYSVSAEEVVGTHLSLGIGGGGGGGDKRMLTTLPPSRTVVQLFGEVLSVQDGDEAQALRHHHT
GRPTAASRKKKRRDAAAGGASATDAAANGHHHQSKKTKTTAARRDDGGGGGGGGRKKLRLTAAQATLLEDSFRAHNILSH
GEKQELARQAGLSARQVEVWFQNRRARTKLKQTEVDCDLLRRWCARLSDDNDRLRRDLADLRRAAAASAGLGAVVCCASC
GADRQLALAAAADNVLPSVASPSHSPHLT
MSSLTTAASSSSSMEEHCYSVSAEEVVGTHLSLGIGGGGGGGDKRMLTTLPPSRTVVQLFGEVLSVQDGDEAQALRHHHT
GRPTAASRKKKRRDAAAGGASATDAAANGHHHQSKKTKTTAARRDDGGGGGGGGRKKLRLTAAQATLLEDSFRAHNILSH
GEKQELARQAGLSARQVEVWFQNRRARTKLKQTEVDCDLLRRWCARLSDDNDRLRRDLADLRRAAAASAGLGAVVCCASC
GADRQLALAAAADNVLPSVASPSHSPHLT
MSSLTTAASSSSSMEEHCYSVSAEEVVGTHLSLGIGGGGGGGDKRMLTTLPPSRTVVQLFGEVLSVQDGDEAQALRHHHT
GRPTAASRKKKRRDAAAGGASATDAAANGHHHQSKKTKTTAARRDDGGGGGGGGRKKLRLTAAQATLLEDSFRAHNILSH
GEKQELARQAGLSARQVEVWFQNRRARTKLKQTEVDCDLLRRWCARLSDDNDRLRRDLADLRRAAAASAGLGAVVCCASC
GADRQLALAAAADNVLPSVASPSHSPHLT
Secondary Structure Color Code | |
---|---|
BEND | region with high backbone curvature without specific hydrogen bonding |
HELX_LH_PP_P | left-handed polyproline helix |
HELX_RH_3T_P | right-handed 3-10 helix |
HELX_RH_AL_P | right-handed alpha helix |
HELX_RH_PI_P | right-handed pi helix |
STRN | beta strand |
TURN_TY1_P | type I turn |
UNDETERMINED | no data available |
Domains Present | |
---|---|
PF00046 |
|
PF05920 |
|
PF02183 |
|
Hover here to show all domains |
GTCCGAGAAACCGACGACTTGTCTG...
GTCCGAGAAACCGACGACTTGTCTGCCTGCCTGCCTGCCTGCCCCTGCAGCAGCTGTTTCCTGTTCTTGGCATTTATTCCAACCCAACCACGCACGCATCAACGCGTACGTACTAAAACTCCCGCCATTACCCCCCCACATTCATTAGCAACCTTAATTGCCCTTCATTAACCCCCCCACCACACGAAACCGTACTACGACCTTGTCCCCTGGCTCCAATCCGCCACCATCAGCTGGTTCTTGGTGTGGAAGTGGAACGCTGCTCGTGTGCCACTCTGCCACTGCCACCTATATAAGCGGACGCACCAGCACCACCAGCACAGCAGCACCCTGTGCACTGATCGAGCCTCCATCTTCGCCATGTCGAGCCTCACCACGGCCGCCAGCAGCAGCAGCAGCATGGAGGAGCACTGCTACTCCGTGTCCGCGGAGGAGGTCGTCGGCACGCACCTGTCCTTAGGGATCGGCGGCGGCGGCGGCGGAGGAGATAAGAGGATGCTAACAACGCTGCCGCCGTCTCGGACGGTAGTGCAGCTGTTCGGCGAGGTGCTGTCGGTGCAGGACGGTGACGAAGCGCAAGCTCTTCGTCATCACCACACGGGCCGGCCGACGGCGGCGAGCAGGAAGAAGAAGAGGAGGGACGCCGCCGCTGGTGGCGCCAGCGCCACTGACGCCGCTGCCAATGGCCATCATCATCAGAGCAAGAAAACCAAGACGACGGCGGCGCGCCGAGACGACGGAGGCGGCGGCGGCGGCGGCGGAAGGAAGAAGCTCCGGCTCACCGCCGCGCAGGCCACCTTGCTCGAGGACAGCTTCCGCGCCCACAACATCCTCTCTCACGGGGAGAAGCAGGAGCTGGCGCGGCAGGCGGGGCTGAGCGCGCGGCAGGTGGAGGTGTGGTTCCAGAACCGGAGGGCCCGGACCAAGCTCAAGCAGACGGAGGTCGACTGCGACCTGCTCCGCCGCTGGTGCGCCCGCCTCTCCGACGACAACGACCGCCTCCGCCGAGACCTCGCCGACCTCCGCCGGGCGGCGGCGGCGTCCGCGGGCCTCGGCGCCGTCGTCTGCTGCGCCTCATGCGGCGCCGACAGGCAGCTCGCCCTCGCCGCCGCCGCCGACAACGTGCTGCCGTCGGTCGCCTCGCCTAGTCACTCACCTCACCTCACCTGACCTGACACCTGACGGCGGCCGTCAACAATATTCGCCCGTGGAATGAAGCACCATATGCTTGCTTGTACTGGTGACCACCATTCTTCCATTTTTCTCTCTGTACATATAAACGGAGCAGCTAGCTAGTACAGTACTAGTGACCACCATATACAGTATATGCTTATTAATTAGGTATGCATGCATAATACTAAAGGTAATAATTAATTACTATGTACTACTTTACTATATATATTACAAACACGAGCTTATTGATTAACTCGTTCCAAAATATGTATTCCATATATATATCTAAGAGAGACGATTTCAATTGATCACCAACATATGT
MSSLTTAASSSSSMEEHCYSVSAEEVVGTHLSLGIGGGGGGGDKRMLTTLPPSRTVVQLFGEVLSVQDGDEAQALRHHHT
GRPTAASRKKKRRDAAAGGASATDAAANGHHHQSKKTKTTAARRDDGGGGGGGGRKKLRLTAAQATLLEDSFRAHNILSH
GEKQELARQAGLSARQVEVWFQNRRARTKLKQTEVDCDLLRRWCARLSDDNDRLRRDLADLRRAAAASAGLGAVVCCASC
GADRQLALAAAADNVLPSVASPSHSPHLT
CCTGATCTTGACCGTCCGAGAAACC...
CCTGATCTTGACCGTCCGAGAAACCGACGACTTGTCTGCCTGCCTGCCTGCCTGCCCCTGCAGCAGCTGTTTCCTGTTCTTGGCATTTATTCCAACCCAACCACGCACGCATCAACGCGTACGTACTAAAACTCCCGCCATTACCCCCCCACATTCATTAGCAACCTTAATTGCCCTTCATTAACCCCCCCACCACACGAAACCGTACTACGACCTTGTCCCCTGGCTCCAATCCGCCACCATCAGCTGGTTCTTGGTGTGGAAGTGGAACGCTGCTCGTGTGCCACTCTGCCACTGCCACCTATATAAGCGGACGCACCAGCACCACCAGCACAGCAGCACCCTGTGCACTGATCGAGCCTCCATCTTCGCCATGTCGAGCCTCACCACGGCCGCCAGCAGCAGCAGCAGCATGGAGGAGCACTGCTACTCCGTGTCCGCGGAGGAGGTCGTCGGCACGCACCTGTCCTTAGGGATCGGCGGCGGCGGCGGCGGAGGAGATAAGAGGATGCTAACAACGCTGCCGCCGTCTCGGACGGTAGTGCAGCTGTTCGGCGAGGTGCTGTCGGTGCAGGACGGTGACGAAGCGCAAGCTCTTCGTCATCACCACACGGGCCGGCCGACGGCGGCGAGCAGGAAGAAGAAGAGGAGGGACGCCGCCGCTGGTGGCGCCAGCGCCACTGACGCCGCTGCCAATGGCCATCATCATCAGAGCAAGAAAACCAAGACGACGGCGGCGCGCCGAGACGACGGAGGCGGCGGCGGCGGCGGCGGAAGGAAGAAGCTCCGGCTCACCGCCGCGCAGGCCACCTTGCTCGAGGACAGCTTCCGCGCCCACAACATCCTCTCTCACGGGGAGAAGCAGGAGCTGGCGCGGCAGGCGGGGCTGAGCGCGCGGCAGGTGGAGGTGTGGTTCCAGAACCGGAGGGCCCGGACCAAGCTCAAGCAGACGGAGGTCGACTGCGACCTGCTCCGCCGCTGGTGCGCCCGCCTCTCCGACGACAACGACCGCCTCCGCCGAGACCTCGCCGACCTCCGCCGGGCGGCGGCGGCGTCCGCGGGCCTCGGCGCCGTCGTCTGCTGCGCCTCATGCGGCGCCGACAGGCAGCTCGCCCTCGCCGCCGCCGCCGACAACGTGCTGCCGTCGGTCGCCTCGCCTAGTCACTCACCTCACCTCACCTGACCTGACACCTGACGGCGGCCGTCAACAATATTCGCCCGTGGAATGAAGCACCATATGCTTGCTTGTACTGGTGACCACCATTCTTCCATTTTTCTCTCTGTACATATAAACGGAGCAGCTAGCTAGTACAGTACTAGTGACCACCATATACAGTATATGCTTATTAATTAGGTATGCATGCATAATACTAAAGGTAATAATTAATTACTATGTACTACTTTACTATATATATTACAAACACGAGCTTATTGATTAACTCGTTCCAAAATATGTATTCCATATATATATCTAAGAGAGACGATTTCAATTGATCACCAACATATGTATATGTTTTTGATAATGGGCATCGACTATCGCGGATATTCTTCAAATTTGTGTCTCTGTCCGTTCACTCTTTTAATTTAGCATGGCTTTCATTGTTTCATTTCATTAATTTGTTTCCATGTTTTTCCTTTTCTTCATTTGTTTGCTTTTAACTGGACTGGACTTGATTAGCTCCATGTACACGTCCGTGATTGTGTTTAGTGGTTTTTTTATTTCTTTCAAAAGAAATAAAATATCTATGCTTAGTGATACTTTA
MSSLTTAASSSSSMEEHCYSVSAEEVVGTHLSLGIGGGGGGGDKRMLTTLPPSRTVVQLFGEVLSVQDGDEAQALRHHHT
GRPTAASRKKKRRDAAAGGASATDAAANGHHHQSKKTKTTAARRDDGGGGGGGGRKKLRLTAAQATLLEDSFRAHNILSH
GEKQELARQAGLSARQVEVWFQNRRARTKLKQTEVDCDLLRRWCARLSDDNDRLRRDLADLRRAAAASAGLGAVVCCASC
GADRQLALAAAADNVLPSVASPSHSPHLT
ATGTCGAGCCTCACCACGGCCGCCA...
ATGTCGAGCCTCACCACGGCCGCCAGCAGCAGCAGCAGCATGGAGGAGCACTGCTACTCCGTGTCCGCGGAGGAGGTCGTCGGCACGCACCTGTCCTTAGGGATCGGCGGCGGCGGCGGCGGAGGAGATAAGAGGATGCTAACAACGCTGCCGCCGTCTCGGACGGTAGTGCAGCTGTTCGGCGAGGTGCTGTCGGTGCAGGACGGTGACGAAGCGCAAGCTCTTCGTCATCACCACACGGGCCGGCCGACGGCGGCGAGCAGGAAGAAGAAGAGGAGGGACGCCGCCGCTGGTGGCGCCAGCGCCACTGACGCCGCTGCCAATGGCCATCATCATCAGAGCAAGAAAACCAAGACGACGGCGGCGCGCCGAGACGACGGAGGCGGCGGCGGCGGCGGCGGAAGGAAGAAGCTCCGGCTCACCGCCGCGCAGGCCACCTTGCTCGAGGACAGCTTCCGCGCCCACAACATCCTCTCTCACGGGGAGAAGCAGGAGCTGGCGCGGCAGGCGGGGCTGAGCGCGCGGCAGGTGGAGGTGTGGTTCCAGAACCGGAGGGCCCGGACCAAGCTCAAGCAGACGGAGGTCGACTGCGACCTGCTCCGCCGCTGGTGCGCCCGCCTCTCCGACGACAACGACCGCCTCCGCCGAGACCTCGCCGACCTCCGCCGGGCGGCGGCGGCGTCCGCGGGCCTCGGCGCCGTCGTCTGCTGCGCCTCATGCGGCGCCGACAGGCAGCTCGCCCTCGCCGCCGCCGCCGACAACGTGCTGCCGTCGGTCGCCTCGCCTAGTCACTCACCTCACCTCACCTGA
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